Human
Statistics about the GENCODE Release 6
The statistics derive from the gtf file that contains only the annotation of the main chromosomes.
For details about the calculation of these statistics please see the README_stats.txt file.
General stats
| Total No of Genes |
51564 |
| Protein-coding genes |
20540 |
| Long non-coding RNA genes |
10782 |
| Small non-coding RNA genes |
8801 |
| Pseudogenes |
11068 |
| - processed pseudogenes |
7970 |
| - unprocessed pseudogenes |
1806 |
| - unitary pseudogenes |
94 |
| - polymorphic pseudogenes |
18 |
| - pseudogenes |
1000 |
| Immunoglobulin/T-cell receptor gene segments |
|
| - protein coding segments |
373 |
| - pseudogenes |
180 |
| Total No of Transcripts |
158489 |
| Protein-coding transcripts |
74251 |
| - full length protein-coding |
58979 |
| - partial length protein-coding |
15272 |
| Nonsense mediated decay transcripts |
7856 |
| Long non-coding RNA loci transcripts |
17660 |
| |
| Total No of distinct translations |
57241 |
| Genes that have more than one distinct translations |
12849 |
Further details on this version's gene and transcript types
| biotype |
genes |
transcripts |
| all IG_genes |
309 |
312 |
| all other pseudogenes |
11068 |
13308 |
| all RNA pseudogenes |
1838 |
1838 |
| all RNA_genes |
6558 |
6613 |
| ambiguous_orf |
0 |
55 |
| antisense |
0 |
36 |
| IG_C_gene |
16 |
18 |
| IG_C_pseudogene |
7 |
7 |
| IG_D_gene |
30 |
30 |
| IG_J_gene |
83 |
83 |
| IG_J_pseudogene |
3 |
3 |
| IG_V_gene |
180 |
181 |
| IG_V_pseudogene |
151 |
151 |
| lincRNA |
1351 |
1406 |
| miRNA |
1756 |
1756 |
| miRNA_pseudogene |
15 |
15 |
| misc_RNA |
1187 |
1187 |
| misc_RNA_pseudogene |
3 |
3 |
| Mt_rRNA |
2 |
2 |
| Mt_tRNA |
22 |
22 |
| Mt_tRNA_pseudogene |
580 |
580 |
| ncrna_host |
0 |
1 |
| non_coding |
0 |
293 |
| nonsense_mediated_decay |
0 |
7856 |
| polymorphic_pseudogene |
18 |
27 |
| processed_pseudogene |
0 |
7941 |
| processed_transcript |
9431 |
36860 |
| protein_coding |
20540 |
74251 |
| pseudogene |
10870 |
2381 |
| retained_intron |
0 |
15220 |
| retrotransposed |
0 |
283 |
| rRNA |
531 |
531 |
| rRNA_pseudogene |
179 |
179 |
| scRNA_pseudogene |
787 |
787 |
| snoRNA |
1521 |
1521 |
| snoRNA_pseudogene |
73 |
73 |
| snRNA |
1944 |
1944 |
| snRNA_pseudogene |
73 |
73 |
| TEC |
0 |
26 |
| TR_C_gene |
3 |
3 |
| TR_J_gene |
13 |
13 |
| TR_V_gene |
48 |
48 |
| TR_V_pseudogene |
19 |
19 |
| transcribed_processed_pseudogene |
0 |
144 |
| transcribed_unprocessed_pseudogene |
0 |
284 |
| tRNA_pseudogene |
128 |
128 |
| unitary_pseudogene |
0 |
139 |
| unprocessed_pseudogene |
0 |
1929 |
