Human

Statistics about the GENCODE Release 25

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 58037
Protein-coding genes 19950
Long non-coding RNA genes 15767
Small non-coding RNA genes 7258
Pseudogenes 14650
- processed pseudogenes 10725
- unprocessed pseudogenes 3400
- unitary pseudogenes 214
- polymorphic pseudogenes 51
- pseudogenes 21
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 411
- pseudogenes 239
Total No of Transcripts 198093
Protein-coding transcripts 80087
- full length protein-coding 54755
- partial length protein-coding 25332
Nonsense mediated decay transcripts 13769
Long non-coding RNA loci transcripts 27692
 
Total No of distinct translations 59812
Genes that have more than one distinct translations 13519

Further details on this version's gene and transcript types

biotype genes transcripts
3prime_overlapping_ncRNA 30 34
antisense 5530 11036
bidirectional_promoter_lncRNA 4 11
IG_C_gene 14 17
IG_C_pseudogene 9 9
IG_D_gene 37 37
IG_J_gene 18 18
IG_J_pseudogene 3 3
IG_pseudogene 1 1
IG_V_gene 145 145
IG_V_pseudogene 193 193
lincRNA 7539 13255
macro_lncRNA 1 1
miRNA 1569 1871
misc_RNA 2213 2227
Mt_rRNA 2 2
Mt_tRNA 22 22
non_coding 3 3
non_stop_decay 0 83
nonsense_mediated_decay 0 13769
polymorphic_pseudogene 51 68
processed_pseudogene 10275 10277
processed_transcript 516 27754
protein_coding 19950 80087
pseudogene 21 42
retained_intron 0 26955
ribozyme 8 8
rRNA 544 544
scaRNA 49 49
scRNA 1 1
sense_intronic 909 966
sense_overlapping 187 309
snoRNA 944 956
snRNA 1900 1900
sRNA 5 5
TEC 1048 1135
TR_C_gene 6 6
TR_D_gene 4 4
TR_J_gene 79 79
TR_J_pseudogene 4 4
TR_V_gene 108 108
TR_V_pseudogene 30 30
transcribed_processed_pseudogene 450 450
transcribed_unitary_pseudogene 60 60
transcribed_unprocessed_pseudogene 737 739
unitary_pseudogene 154 155
unprocessed_pseudogene 2663 2664
vaultRNA 1 1