Human

Release 10 (GRCh37)

Statistics of this release
More information about this assembly (including patches, scaffolds and haplotypes)

GTF files

Content	Regions	Description	Download
Comprehensive gene annotation	CHR	It contains the comprehensive gene annotation on the reference chromosomes only Updated main file: replaced ncRNA_host biotypes with ncRNA_host attributes	GTF GTF
Comprehensive gene annotation	CHR	It contains the comprehensive gene annotation on the reference chromosomes only Updated main file: replaced ncRNA_host biotypes with ncRNA_host attributes	GTF GTF
Long non-coding RNA gene annotation	CHR	It contains the comprehensive gene annotation of lncRNA genes on the reference chromosomes This is a subset of the main annotation file	GTF
PolyA feature annotation	CHR	It contains the polyA features (polyA_signal, polyA_site, pseudo_polyA) manually annotated by HAVANA on the reference chromosomes This dataset does not form part of the main annotation file	GTF
Consensus pseudogenes predicted by the Yale and UCSC pipelines	CHR	2-way consensus (retrotransposed) pseudogenes predicted by the Yale and UCSC pipelines, but not by HAVANA, on the reference chromosomes This dataset does not form part of the main annotation file	GTF
Predicted tRNA genes	CHR	tRNA genes predicted by ENSEMBL on the reference chromosomes using tRNAscan-SE This dataset does not form part of the main annotation file	GTF

Fasta files

Content	Regions	Description	Download
Protein-coding transcript sequences	CHR	Nucleotide sequences of coding transcripts on the reference chromosomes Transcript biotypes: protein_coding, nonsense_mediated_decay, non_stop_decay, IG__gene, TR__gene, polymorphic_pseudogene	Fasta
Protein-coding transcript translation sequences	CHR	Amino acid sequences of coding transcript translations on the reference chromosomes Transcript biotypes: protein_coding, nonsense_mediated_decay, non_stop_decay, IG__gene, TR__gene, polymorphic_pseudogene	Fasta

Metadata files

Content	Regions	Description	Download
Annotation remarks	CHR	Remarks made during the manual annotation of the transcript	Metadata
Exon annotation evidence	CHR	Piece of evidence used in the annotation of an exon (usually peptides, mRNAs, ESTs)	Metadata
Gene source	CHR	Source of the gene annotation (Ensembl, Havana, Ensembl-Havana merged model or imported in the case of small RNA and mitochondrial genes)	Metadata
Gene symbol	CHR	HGNC approved gene symbol (from Ensembl xref pipeline)	Metadata
PDB id	CHR	PDB entries associated to the transcript (from Ensembl xref pipeline)	Metadata
PolyA features	CHR	Manually annotated polyA features overlapping the transcript 3'-end	Metadata
PubMed id	CHR	Pubmed ids of publications associated to the transcript (from HGNC website)	Metadata
RefSeq	CHR	RefSeq RNA and/or protein associated to the transcript (from Ensembl xref pipeline)	Metadata
SwissProt	CHR	UniProtKB/SwissProt entry associated to the transcript (from Ensembl xref pipeline)	Metadata
Transcript source	CHR	Source of the transcript annotation	Metadata
Transcript annotation evidence	CHR	Piece of evidence used in the annotation of the transcript	Metadata
TrEMBL	CHR	UniProtKB/TrEMBL entry associated to the transcript (from Ensembl xref pipeline)	Metadata